HL_9R9O_064

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9R9O|1|C1|A|3243, 9R9O|1|C1|A|3244, 9R9O|1|C1|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_064 not in the Motif Atlas

Homologous match to HL_9PN5_067

Geometric discrepancy: 0.0985

The information below is about HL_9PN5_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9R9O|1|C1|C|3240
9R9O|1|C1|G|3241
9R9O|1|C1|G|3242
9R9O|1|C1|A|3243
9R9O|1|C1|A|3244
9R9O|1|C1|A|3245
9R9O|1|C1|G|3246
9R9O|1|C1|G|3247

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A