HL_9R9O_097
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 9R9O|1|C3|U|81, 9R9O|1|C3|C|84, 9R9O|1|C3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9R9O_097 not in the Motif Atlas
- Homologous match to HL_9AXU_072
- Geometric discrepancy: 0.5111
- The information below is about HL_9AXU_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68571.2
- Basepair signature
- cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9R9O|1|C3|U|69
9R9O|1|C3|G|70
9R9O|1|C3|A|71
9R9O|1|C3|A|72
9R9O|1|C3|U|73
9R9O|1|C3|U|74
9R9O|1|C3|G|75
9R9O|1|C3|C|76
9R9O|1|C3|A|77
9R9O|1|C3|G|78
9R9O|1|C3|A|79
9R9O|1|C3|A|80
9R9O|1|C3|U|81
9R9O|1|C3|U|82
9R9O|1|C3|C|83
9R9O|1|C3|C|84
9R9O|1|C3|G|85
9R9O|1|C3|U|86
9R9O|1|C3|G|87
9R9O|1|C3|A|88
9R9O|1|C3|A|89
Current chains
- Chain C3
- 5.8S ribosomal RNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: