HL_9R9O_098

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

9R9O|1|C3|A|111, 9R9O|1|C3|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_098 not in the Motif Atlas

Homologous match to HL_9PN5_075

Geometric discrepancy: 0.0775

The information below is about HL_9PN5_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23875.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

18

Unit IDs

9R9O|1|C3|C|108
9R9O|1|C3|A|109
9R9O|1|C3|C|110
9R9O|1|C3|A|111
9R9O|1|C3|U|112
9R9O|1|C3|U|113
9R9O|1|C3|G|114

Current chains

Chain C3

5.8S ribosomal RNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L25

Chain Lj

60S ribosomal protein L37-A

Chain Ll

60S ribosomal protein L39