HL_9RVC_005

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCUUGCU

Length

9 nucleotides

Bulged bases

9RVC|1|A|C|219, 9RVC|1|A|U|220, 9RVC|1|A|U|221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_005 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3621

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9RVC|1|A|G|216
9RVC|1|A|G|217
9RVC|1|A|U|218
9RVC|1|A|C|219
9RVC|1|A|U|220
9RVC|1|A|U|221
9RVC|1|A|G|222
9RVC|1|A|C|223
9RVC|1|A|U|224

Current chains

Chain A

16S rRNA

Nearby chains