HL_9SS4_019

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_019 not in the Motif Atlas

Geometric match to HL_8B0X_051

Geometric discrepancy: 0.1449

The information below is about HL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS4|1|D2|U|641
9SS4|1|D2|U|642
9SS4|1|D2|A|643
9SS4|1|D2|A|644
9SS4|1|D2|C|645
9SS4|1|D2|U|646
9SS4|1|D2|G|647

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B6

Large ribosomal subunit protein bL33

Chain B8

Large ribosomal subunit protein bL35