HL_9SS4_031

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_031 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.1763

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9SS4|1|D2|G|1281
9SS4|1|D2|U|1282
9SS4|1|D2|G|1283
9SS4|1|D2|A|1284
9SS4|1|D2|A|1285
9SS4|1|D2|A|1286
9SS4|1|D2|A|1287
9SS4|1|D2|G|1288
9SS4|1|D2|C|1289

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B5

Large ribosomal subunit protein bL32

Chain BQ

Large ribosomal subunit protein bL17

Chain BV

Large ribosomal subunit protein uL22