HL_9SYR_020

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9SYR|1|L1|A|1630, 9SYR|1|L1|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SYR_020 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.0809

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9SYR|1|L1|G|1627
9SYR|1|L1|C|1628
9SYR|1|L1|G|1629
9SYR|1|L1|A|1630
9SYR|1|L1|A|1631
9SYR|1|L1|A|1632
9SYR|1|L1|G|1633
9SYR|1|L1|A|1634
9SYR|1|L1|C|1635

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37

Chain LH

60S ribosomal protein L15

Chain La

60S ribosomal protein L8