HL_9SYR_066
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- CAGCUAGC(PSU)G
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SYR_066 not in the Motif Atlas
- Homologous match to HL_9AXU_071
- Geometric discrepancy: 0.1828
- The information below is about HL_9AXU_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9SYR|1|L3|C|47
9SYR|1|L3|A|48
9SYR|1|L3|G|49
9SYR|1|L3|C|50
9SYR|1|L3|U|51
9SYR|1|L3|A|52
9SYR|1|L3|G|53
9SYR|1|L3|C|54
9SYR|1|L3|PSU|55
9SYR|1|L3|G|56
Current chains
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Large ribosomal subunit protein eL37
- Chain LC
- 60S ribosomal protein L39
- Chain Lo
- 60S ribosomal protein L23a
- Chain Ly
- 60S ribosomal protein L35
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