HL_9T4R_041

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9T4R|1|a|A|199, 9T4R|1|a|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9T4R_041 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0843

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9T4R|1|a|G|197
9T4R|1|a|A|198
9T4R|1|a|A|199
9T4R|1|a|A|200
9T4R|1|a|C|201
9T4R|1|a|A|202
9T4R|1|a|U|203
9T4R|1|a|C|204

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28