HL_9T4R_104
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 9T4R|1|b|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9T4R_104 not in the Motif Atlas
- Geometric match to HL_9E6Q_068
- Geometric discrepancy: 0.0919
- The information below is about HL_9E6Q_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.4
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9T4R|1|b|U|32
9T4R|1|b|U|33
9T4R|1|b|C|34
9T4R|1|b|C|35
9T4R|1|b|C|36
9T4R|1|b|A|37
9T4R|1|b|U|38
9T4R|1|b|G|39
9T4R|1|b|C|40
9T4R|1|b|C|41
9T4R|1|b|G|42
9T4R|1|b|A|43
9T4R|1|b|A|44
9T4R|1|b|C|45
9T4R|1|b|A|46
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL31B
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
Coloring options: