HL_9TZ5_004

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUUCGAG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|U|145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_004 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.2933

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

9TZ5|1|a|C|142
9TZ5|1|a|U|143
9TZ5|1|a|U|144
9TZ5|1|a|U|145
9TZ5|1|a|C|146
9TZ5|1|a|G|147
9TZ5|1|a|A|148
9TZ5|1|a|G|149

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23

Chain r

Large ribosomal subunit protein uL29