HL_9UZK_020

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9UZK|1|2|U|1057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZK_020 not in the Motif Atlas

Homologous match to HL_9H3G_095

Geometric discrepancy: 0.3475

The information below is about HL_9H3G_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9UZK|1|2|G|1050
9UZK|1|2|A|1051
9UZK|1|2|U|1052
9UZK|1|2|C|1053
9UZK|1|2|A|1054
9UZK|1|2|G|1055
9UZK|1|2|A|1056
9UZK|1|2|U|1057
9UZK|1|2|A|1058
9UZK|1|2|C|1059
9UZK|1|2|C|1060

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein S14

Chain y

Transfer RNA; tRNA

Chain z

EMCV IRES