HL_9VTH_022
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|11|U|1007
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_022 not in the Motif Atlas
- Homologous match to HL_9H3G_095
- Geometric discrepancy: 0.0947
- The information below is about HL_9H3G_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9VTH|1|11|G|1000
9VTH|1|11|A|1001
9VTH|1|11|U|1002
9VTH|1|11|C|1003
9VTH|1|11|A|1004
9VTH|1|11|G|1005
9VTH|1|11|A|1006
9VTH|1|11|U|1007
9VTH|1|11|A|1008
9VTH|1|11|C|1009
9VTH|1|11|C|1010
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 15
- RNA (5'-R(P*AP*CP*AP*AP*UP*G)-3')
- Chain 16
- Transfer RNA; tRNA
- Chain SI
- 40S ribosomal protein S14-2
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