HL_9VTH_025
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9VTH|1|11|A|1199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_025 not in the Motif Atlas
- Homologous match to HL_9PN5_101
- Geometric discrepancy: 0.0783
- The information below is about HL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|G|1191
9VTH|1|11|A|1192
9VTH|1|11|C|1193
9VTH|1|11|U|1194
9VTH|1|11|C|1195
9VTH|1|11|A|1196
9VTH|1|11|A|1197
9VTH|1|11|C|1198
9VTH|1|11|A|1199
9VTH|1|11|C|1200
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain 16
- Transfer RNA; tRNA
- Chain SG
- 40S ribosomal protein S16
- Chain SH
- 40S ribosomal protein S20-2
- Chain SL
- 40S ribosomal protein S29
- Chain SO
- 40S ribosomal protein S15-like
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