HL_9VTH_033

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

9VTH|1|11|G|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_033 not in the Motif Atlas

Homologous match to HL_9PN5_109

Geometric discrepancy: 0.12

The information below is about HL_9PN5_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25307.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9VTH|1|11|G|1600
9VTH|1|11|U|1601
9VTH|1|11|C|1602
9VTH|1|11|A|1603
9VTH|1|11|U|1604
9VTH|1|11|C|1605
9VTH|1|11|A|1606
9VTH|1|11|G|1607
9VTH|1|11|C|1608

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S16

Chain SH

40S ribosomal protein S20-2

Chain SL

40S ribosomal protein S29

Chain SX

40S ribosomal protein S19-3-like