HL_9VTH_035

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUCCCAUCAGAACU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_035 not in the Motif Atlas

Geometric match to HL_9E6Q_068

Geometric discrepancy: 0.0709

The information below is about HL_9E6Q_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.4

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9VTH|1|12|A|32
9VTH|1|12|U|33
9VTH|1|12|C|34
9VTH|1|12|C|35
9VTH|1|12|C|36
9VTH|1|12|A|37
9VTH|1|12|U|38
9VTH|1|12|C|39
9VTH|1|12|A|40
9VTH|1|12|G|41
9VTH|1|12|A|42
9VTH|1|12|A|43
9VTH|1|12|C|44
9VTH|1|12|U|45

Current chains

Chain 12

5S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LE

60S ribosomal protein L11-1

Chain LK

60S ribosomal protein L5-like