HL_9VTH_063

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9VTH|1|14|A|923, 9VTH|1|14|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_063 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.0711

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9VTH|1|14|G|920
9VTH|1|14|C|921
9VTH|1|14|G|922
9VTH|1|14|A|923
9VTH|1|14|A|924
9VTH|1|14|A|925
9VTH|1|14|G|926
9VTH|1|14|A|927
9VTH|1|14|C|928

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L8-like

Chain LU

Ribosomal protein L15

Chain Lk

Ribosomal protein L37