HL_9VTH_098

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCCAGUACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_098 not in the Motif Atlas

Homologous match to HL_9H3G_059

Geometric discrepancy: 0.1144

The information below is about HL_9H3G_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9VTH|1|14|U|2727
9VTH|1|14|C|2728
9VTH|1|14|C|2729
9VTH|1|14|A|2730
9VTH|1|14|G|2731
9VTH|1|14|U|2732
9VTH|1|14|A|2733
9VTH|1|14|C|2734
9VTH|1|14|G|2735

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LI

60s ribosomal protein l27a-3

Chain LV

60S ribosomal protein L18-2

Chain LY

60S ribosomal protein L21-1-like

Chain Lp

60S ribosomal protein L44