HL_9WNQ_050

3D structure

PDB id

9WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9WNQ|1|b|A|196, 9WNQ|1|b|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WNQ_050 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1113

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9WNQ|1|b|G|194
9WNQ|1|b|A|195
9WNQ|1|b|A|196
9WNQ|1|b|A|197
9WNQ|1|b|C|198
9WNQ|1|b|A|199
9WNQ|1|b|U|200
9WNQ|1|b|C|201

Current chains

Chain b

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain X

Transfer RNA; tRNA

Chain m

50S ribosomal protein L15