HL_9WW5_095

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_095 not in the Motif Atlas

Homologous match to HL_9SUM_087

Geometric discrepancy: 0.1377

The information below is about HL_9SUM_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9WW5|1|BA|A|957
9WW5|1|BA|G|958
9WW5|1|BA|G|959
9WW5|1|BA|U|960
9WW5|1|BA|G|961
9WW5|1|BA|A|962
9WW5|1|BA|A|963
9WW5|1|BA|A|964
9WW5|1|BA|U|965
9WW5|1|BA|PSU|966

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ba

Small ribosomal subunit protein uS11