HL_9WW5_101

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

9WW5|1|BA|C|1247, 9WW5|1|BA|B8N|1248, 9WW5|1|BA|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9WW5_101 not in the Motif Atlas

Homologous match to HL_9PN5_101

Geometric discrepancy: 0.4072

The information below is about HL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9WW5|1|BA|G|1245
9WW5|1|BA|A|1246
9WW5|1|BA|C|1247
9WW5|1|BA|B8N|1248
9WW5|1|BA|C|1249
9WW5|1|BA|A|1250
9WW5|1|BA|A|1251
9WW5|1|BA|C|1252
9WW5|1|BA|A|1253
9WW5|1|BA|C|1254

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain BL

40S ribosomal protein S16

Chain BO

40S ribosomal protein S20

Chain BT

40S ribosomal protein S29