HL_9Y4G_071

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9Y4G|1|A6|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_071 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.234

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9Y4G|1|A6|G|4907
9Y4G|1|A6|G|4908
9Y4G|1|A6|A|4909
9Y4G|1|A6|G|4910
9Y4G|1|A6|A|4911
9Y4G|1|A6|G|4912
9Y4G|1|A6|G|4913
9Y4G|1|A6|C|4914

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13a