HL_9Y79_032

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_032 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.2003

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9Y79|1|D|C|1314
9Y79|1|D|U|1315
9Y79|1|D|G|1316
9Y79|1|D|C|1317
9Y79|1|D|A|1318
9Y79|1|D|A|1319
9Y79|1|D|C|1320
9Y79|1|D|U|1321
9Y79|1|D|C|1322
9Y79|1|D|G|1323

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS14

Chain W

Small ribosomal subunit protein uS19

Chain X

Small ribosomal subunit protein uS13