HL_9Y79_054

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

9Y79|1|a|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_054 not in the Motif Atlas

Geometric match to HL_8B0X_051

Geometric discrepancy: 0.2956

The information below is about HL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9Y79|1|a|U|641
9Y79|1|a|U|642
9Y79|1|a|A|643
9Y79|1|a|A|644
9Y79|1|a|C|645
9Y79|1|a|U|646
9Y79|1|a|G|647

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35