HL_9YDB_061

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9YDB|1|A|A|3243, 9YDB|1|A|A|3244, 9YDB|1|A|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_061 not in the Motif Atlas

Homologous match to HL_9PN5_067

Geometric discrepancy: 0.0867

The information below is about HL_9PN5_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9YDB|1|A|C|3240
9YDB|1|A|G|3241
9YDB|1|A|G|3242
9YDB|1|A|A|3243
9YDB|1|A|A|3244
9YDB|1|A|A|3245
9YDB|1|A|G|3246
9YDB|1|A|G|3247

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LQ

60S ribosomal protein L16-A