HL_9YDB_068
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 9YDB|1|C|A|111, 9YDB|1|C|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDB_068 not in the Motif Atlas
- Homologous match to HL_9PN5_075
- Geometric discrepancy: 0.1528
- The information below is about HL_9PN5_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23875.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 18
Unit IDs
9YDB|1|C|C|108
9YDB|1|C|A|109
9YDB|1|C|C|110
9YDB|1|C|A|111
9YDB|1|C|U|112
9YDB|1|C|U|113
9YDB|1|C|G|114
Current chains
- Chain C
- 8S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LZ
- 60S ribosomal protein L25
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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