IL_11GG_031

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGUAG*CGUAGAUA

Length

13 nucleotides

Bulged bases

11GG|1|C|A|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_031 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.1195

The information below is about IL_8B0X_034

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

11GG|1|C|U|678
11GG|1|C|G|679
11GG|1|C|U|680
11GG|1|C|A|681
11GG|1|C|G|682
*
11GG|1|C|C|693
11GG|1|C|G|694
11GG|1|C|U|695
11GG|1|C|A|696
11GG|1|C|G|697
11GG|1|C|A|698
11GG|1|C|U|699
11GG|1|C|A|700

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11