IL_11GG_047

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

11GG|1|C|A|1124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_047 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.2091

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

11GG|1|C|C|1123
11GG|1|C|A|1124
11GG|1|C|G|1125
11GG|1|C|C|1126
*
11GG|1|C|G|1136
11GG|1|C|G|1137

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein uS9