IL_11GG_088
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11GG_088 not in the Motif Atlas
- Geometric match to IL_8B0X_090
- Geometric discrepancy: 0.0847
- The information below is about IL_8B0X_090
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
11GG|1|I|G|856
11GG|1|I|G|857
11GG|1|I|G|858
11GG|1|I|G|859
11GG|1|I|U|860
11GG|1|I|A|861
11GG|1|I|G|862
*
11GG|1|I|C|915
11GG|1|I|G|916
11GG|1|I|A|917
11GG|1|I|A|918
11GG|1|I|U|919
11GG|1|I|A|920
11GG|1|I|C|921
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain J
- 5S ribosomal RNA; 5S rRNA
- Chain U
- Large ribosomal subunit protein uL16
- Chain e
- 50S ribosomal protein L27
- Chain h
- 50S ribosomal protein L30
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