IL_11HV_014
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 11HV|1|28|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HV_014 not in the Motif Atlas
- Homologous match to IL_8GLP_017
- Geometric discrepancy: 0.1059
- The information below is about IL_8GLP_017
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_41261.1
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
11HV|1|28|C|339
11HV|1|28|C|340
11HV|1|28|G|341
11HV|1|28|G|342
*
11HV|1|58|C|32
11HV|1|58|G|33
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 37
- 60S ribosomal protein L37
- Chain L4
- 60S ribosomal protein L4
Coloring options: