IL_11HV_036

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

11HV|1|28|C|1214, 11HV|1|28|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_036 not in the Motif Atlas

Geometric match to IL_8GLP_043

Geometric discrepancy: 0.2209

The information below is about IL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

11HV|1|28|C|1082
11HV|1|28|U|1083
11HV|1|28|C|1084
*
11HV|1|28|G|1213
11HV|1|28|C|1214
11HV|1|28|C|1215
11HV|1|28|C|1216
11HV|1|28|G|1217

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 29

Large ribosomal subunit protein eL29

Chain L7

60S ribosomal protein L7