IL_11HV_114

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

11HV|1|28|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_114 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.0685

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

11HV|1|28|G|3916
11HV|1|28|A|3917
*
11HV|1|28|U|4384
11HV|1|28|A|4385
11HV|1|28|C|4386
11HV|1|28|C|4387

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L8