IL_11HV_129

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

11HV|1|28|G|4522, 11HV|1|28|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_129 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.0635

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

11HV|1|28|C|4456
11HV|1|28|U|4457
11HV|1|28|C|4458
*
11HV|1|28|G|4520
11HV|1|28|U|4521
11HV|1|28|G|4522
11HV|1|28|A|4523
11HV|1|28|G|4524

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 25

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3