IL_11IQ_050
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11IQ_050 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.399
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
11IQ|1|18|C|1098
11IQ|1|18|G|1099
11IQ|1|18|A|1100
11IQ|1|18|U|1101
11IQ|1|18|G|1102
11IQ|1|18|C|1103
*
11IQ|1|18|G|1129
11IQ|1|18|G|1130
11IQ|1|18|G|1131
11IQ|1|18|C|1132
11IQ|1|18|A|1133
11IQ|1|18|G|1134
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain AS
- 40S ribosomal protein S3a
- Chain BB
- 40S_SA_C domain-containing protein
- Chain FF
- 40S ribosomal protein S13
- Chain JJ
- 40S ribosomal protein S17
- Chain UU
- eS26
- Chain VV
- 40S ribosomal protein S27
Coloring options: