IL_11IQ_196
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUGAAUG*CGCG
- Length
- 11 nucleotides
- Bulged bases
- 11IQ|1|28|A|3711
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11IQ_196 not in the Motif Atlas
- Homologous match to IL_9PN5_084
- Geometric discrepancy: 0.5246
- The information below is about IL_9PN5_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.3
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
11IQ|1|28|C|3708
11IQ|1|28|U|3709
11IQ|1|28|G|3710
11IQ|1|28|A|3711
11IQ|1|28|A|3712
11IQ|1|28|U|3713
11IQ|1|28|G|3714
*
11IQ|1|28|C|3739
11IQ|1|28|G|3740
11IQ|1|28|C|3741
11IQ|1|28|G|3742
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- Eukaryotic translation initiation factor 5A-1
- Chain L8
- 60S ribosomal protein L8
- Chain u
- Ribosomal protein
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