IL_11IQ_203

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

11IQ|1|28|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11IQ_203 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.103

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

11IQ|1|28|G|3916
11IQ|1|28|A|3917
*
11IQ|1|28|U|4384
11IQ|1|28|A|4385
11IQ|1|28|C|4386
11IQ|1|28|C|4387

Current chains

Chain 28

28S rRNA

Nearby chains

Chain B

Eukaryotic translation initiation factor 5A-1

Chain L8

60S ribosomal protein L8