IL_11JJ_074
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 11JJ|1|18|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_074 not in the Motif Atlas
- Homologous match to IL_9PN5_223
- Geometric discrepancy: 0.3017
- The information below is about IL_9PN5_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
11JJ|1|18|C|1708
11JJ|1|18|G|1709
11JJ|1|18|C|1710
11JJ|1|18|U|1711
*
11JJ|1|18|A|1822
11JJ|1|18|A|1823
11JJ|1|18|A|1824
11JJ|1|18|A|1825
11JJ|1|18|G|1826
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- eL41
- Chain IF
- IFRD2
- Chain RR
- 40S ribosomal protein S23
- Chain v
- Elongation factor 2
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