IL_1J2B_004

3D structure

PDB id

1J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J2B_004 not in the Motif Atlas

Geometric match to IL_5E81_371

Geometric discrepancy: 0.1656

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

1J2B|1|D|G|930
1J2B|1|D|C|931
1J2B|1|D|C|932
*
1J2B|1|D|G|940
1J2B|1|D|G|941
1J2B|1|D|C|942

Current chains

Chain D

tRNA(Val)

Nearby chains

Chain A

Archaeosine tRNA-guanine transglycosylase

Chain B

Archaeosine tRNA-guanine transglycosylase