IL_1J5A_005

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACGAG*CUUUGACU

Length

13 nucleotides

Bulged bases

1J5A|1|A|U|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_005 not in the Motif Atlas

Homologous match to IL_7A0S_004

Geometric discrepancy: 0.2043

The information below is about IL_7A0S_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_94910.1

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1J5A|1|A|A|80
1J5A|1|A|C|81
1J5A|1|A|G|82
1J5A|1|A|A|83
1J5A|1|A|G|84
*
1J5A|1|A|C|96
1J5A|1|A|U|97
1J5A|1|A|U|98
1J5A|1|A|U|99
1J5A|1|A|G|100
1J5A|1|A|A|101
1J5A|1|A|C|102
1J5A|1|A|U|103

Current chains

Chain A

23S RRNA

Nearby chains