IL_1J5A_048

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1J5A|1|A|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1J5A_048 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1619

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

1J5A|1|A|C|1221
1J5A|1|A|G|1222
1J5A|1|A|G|1223
1J5A|1|A|A|1224
1J5A|1|A|G|1225
1J5A|1|A|A|1226
1J5A|1|A|A|1227
1J5A|1|A|G|1228
*
1J5A|1|A|U|1247
1J5A|1|A|G|1248
1J5A|1|A|G|1249
1J5A|1|A|A|1250
1J5A|1|A|G|1251

Current chains

Chain A

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L22