IL_1N36_019

3D structure

PDB id

1N36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

1N36|1|A|A|532, 1N36|1|A|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1N36_019 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3453

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1N36|1|A|G|515
1N36|1|A|U|516
1N36|1|A|G|517
1N36|1|A|C|518
1N36|1|A|C|519
1N36|1|A|A|520
1N36|1|A|G|521
*
1N36|1|A|C|528
1N36|1|A|G|529
1N36|1|A|G|530
1N36|1|A|U|531
1N36|1|A|A|532
1N36|1|A|A|533
1N36|1|A|U|534
1N36|1|A|A|535
1N36|1|A|C|536

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain C

30S RIBOSOMAL PROTEIN S3

Chain D

30S RIBOSOMAL PROTEIN S4

Chain L

30S RIBOSOMAL PROTEIN S12