IL_1N36_043
3D structure
- PDB id
- 1N36 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- GCCGUC*GUCUGGU
- Length
- 13 nucleotides
- Bulged bases
- 1N36|1|A|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1N36_043 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3754
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
1N36|1|A|G|1058
1N36|1|A|C|1059
1N36|1|A|C|1060
1N36|1|A|G|1061
1N36|1|A|U|1062
1N36|1|A|C|1063
*
1N36|1|A|G|1193
1N36|1|A|U|1194
1N36|1|A|C|1195
1N36|1|A|U|1196
1N36|1|A|G|1197
1N36|1|A|G|1198
1N36|1|A|U|1199
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain E
- 30S RIBOSOMAL PROTEIN S5
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
Coloring options: