IL_1NKW_011

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

1NKW|1|0|C|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_011 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5697

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.6

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

1NKW|1|0|C|303
1NKW|1|0|A|304
1NKW|1|0|A|305
1NKW|1|0|G|306
*
1NKW|1|0|C|354
1NKW|1|0|G|355
1NKW|1|0|A|356
1NKW|1|0|A|357
1NKW|1|0|C|358
1NKW|1|0|G|359

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L24