IL_1NKW_040

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

1NKW|1|0|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_040 not in the Motif Atlas

Homologous match to IL_7A0S_033

Geometric discrepancy: 0.2309

The information below is about IL_7A0S_033

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1NKW|1|0|C|1009
1NKW|1|0|U|1010
1NKW|1|0|A|1011
1NKW|1|0|A|1012
1NKW|1|0|G|1013
*
1NKW|1|0|C|1164
1NKW|1|0|G|1165
1NKW|1|0|A|1166
1NKW|1|0|A|1167
1NKW|1|0|G|1168

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L20

Chain X

50S ribosomal protein L30