IL_1NKW_041

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

1NKW|1|0|C|1016, 1NKW|1|0|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_041 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.3116

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

1NKW|1|0|U|1015
1NKW|1|0|C|1016
1NKW|1|0|C|1017
1NKW|1|0|C|1018
1NKW|1|0|U|1019
1NKW|1|0|A|1020
1NKW|1|0|A|1021
1NKW|1|0|A|1022
*
1NKW|1|0|U|1161
1NKW|1|0|A|1162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20