IL_1NKW_053

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1NKW|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NKW_053 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2299

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

1NKW|1|0|C|1221
1NKW|1|0|G|1222
1NKW|1|0|G|1223
1NKW|1|0|A|1224
1NKW|1|0|G|1225
1NKW|1|0|A|1226
1NKW|1|0|A|1227
1NKW|1|0|G|1228
*
1NKW|1|0|U|1247
1NKW|1|0|G|1248
1NKW|1|0|G|1249
1NKW|1|0|A|1250
1NKW|1|0|G|1251

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain O

50S ribosomal protein L20

Chain Q

50S ribosomal protein L22