IL_1NWY_019

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

1NWY|1|0|G|814, 1NWY|1|0|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_019 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.3991

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

1NWY|1|0|G|687
1NWY|1|0|A|688
1NWY|1|0|A|689
1NWY|1|0|A|690
1NWY|1|0|C|691
*
1NWY|1|0|G|812
1NWY|1|0|A|813
1NWY|1|0|G|814
1NWY|1|0|A|815
1NWY|1|0|U|816
1NWY|1|0|A|817
1NWY|1|0|G|818
1NWY|1|0|C|819

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain C

ribosomal protein L4

Chain J

ribosomal protein L15