IL_1NWY_049

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

1NWY|1|0|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1NWY_049 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2293

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

1NWY|1|0|C|1221
1NWY|1|0|G|1222
1NWY|1|0|G|1223
1NWY|1|0|A|1224
1NWY|1|0|G|1225
1NWY|1|0|A|1226
1NWY|1|0|A|1227
1NWY|1|0|G|1228
*
1NWY|1|0|U|1247
1NWY|1|0|G|1248
1NWY|1|0|G|1249
1NWY|1|0|A|1250
1NWY|1|0|G|1251

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain J

ribosomal protein L15

Chain O

ribosomal protein L20

Chain Q

ribosomal protein L22