IL_1VWW_168

3D structure

PDB id

1VWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUC*GUC

Length

7 nucleotides

Bulged bases

1VWW|1|5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VWW_168 not in the Motif Atlas

Geometric match to IL_7QQP_008

Geometric discrepancy: 0.1918

The information below is about IL_7QQP_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

1VWW|1|5|G|11
1VWW|1|5|A|12
1VWW|1|5|U|13
1VWW|1|5|C|14
*
1VWW|1|8|G|143
1VWW|1|8|U|144
1VWW|1|8|C|145

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains