IL_1VX2_105

3D structure

PDB id

1VX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUUA*UUGACU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX2_105 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3947

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

1VX2|1|2|G|1726
1VX2|1|2|G|1727
1VX2|1|2|U|1728
1VX2|1|2|U|1729
1VX2|1|2|U|1730
1VX2|1|2|A|1731
*
1VX2|1|2|U|1803
1VX2|1|2|U|1804
1VX2|1|2|G|1805
1VX2|1|2|A|1806
1VX2|1|2|C|1807
1VX2|1|2|U|1808

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein eS8